STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0533Putative secreted trypsin-like serine protease. (330 aa)    
Predicted Functional Partners:
sce7740
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.884
sce2306
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.881
sce0534
Hypothetical protein predicted by Glimmer/Critica.
       0.762
sce5846
Peptidase_M14 domain-containing protein; Unnamed protein product; Family membership.
  
 
 
 0.753
sce8315
Hypothetical secreted peptidase.
 
   
 0.741
sce1332
Lysyl oxidase-like; Family membership.
  
     0.693
sce8389
Hypothetical protein predicted by Glimmer/Critica.
  
     0.674
sce1515
Putative endopeptidase; Family membership; Belongs to the peptidase S1B family.
 
   
 0.662
sce6803
Probable serine protease; Family membership.
  
     0.636
sce0056
Hypothetical protein predicted by Glimmer/Critica.
  
     0.613
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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