Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0542Probable peptidase. (597 aa)    
Predicted Functional Partners:
sce0543
Sigma-54 dependent transcriptional regulator; Family membership.
       0.522
sce6092
PE-PGRS family protein; Family membership.
  
     0.499
sce6387
Putative secreted protein.
  
     0.469
sce8872
PE-PGRS family protein.
  
     0.448
eriC
Chloride channel; High confidence in function and specificity.
  
     0.413
sce8588
Putative UDP-glucose 4-epimerase; Family membership.
  
     0.413
sce8764
Partially conserved glycine-rich hypothetical protein.
  
     0.400
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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