Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0547Cation efflux system protein; High confidence in function and specificity. (338 aa)    
Predicted Functional Partners:
sce0546
Uncharacterized protein conserved in bacteria.
 
  
 0.899
yebN
Putative membrane protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
     
 0.781
sce0545
Helicase, putative.
 
 
 
 0.628
sce0544
Hypothetical protein predicted by Glimmer/Critica.
       0.555
ethA
Monooxygenase, flavin-binding family; High confidence in function and specificity.
  
    0.546
sce4944
Putative monooxygenase; Specificity unclear.
  
    0.546
sce4013
Probable cation-transporting ATPase.
  
  
 0.479
sce1254
Cation-transporting ATPase; Family membership.
 
  
 0.438
sce1482
Hypothetical protein.
  
    0.419
sce8997
Hypothetical protein.
  
    0.419
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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