Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0551Hypothetical protein with NHL repeat; High confidence in function and specificity. (1889 aa)    
Predicted Functional Partners:
sce6823
NRPS/PKS hybrid.
  
    0.804
mxcF
Isochorismatase; High confidence in function and specificity.
  
    0.772
napG
Putative ferredoxin; Family membership.
  
 
 0.666
norB
Nitric oxide reductase; High confidence in function and specificity.
  
 
 0.628
sce8584
Nitric oxide reductase; High confidence in function and specificity.
  
 
 0.628
sce8877
Hypothetical protein; Glucose/sorbosone dehydrogenases.
  
     0.604
tonB1
Putative TonB protein; Specificity unclear.
   
    0.548
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
    0.548
mxcE
(2,3-dihydroxybenzoyl)adenylate synthase; High confidence in function and specificity.
  
    0.535
sce6370
Conserved hypothetical protein with Kelch motif.
  
     0.529
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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