Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0557Hypothetical protein. (248 aa)    
Predicted Functional Partners:
sce0556
Putative secreted protein.
       0.773
sce0558
ECF-family RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
sce0559
Hypothetical protein predicted by Glimmer/Critica.
       0.569
sce0554
Putative secreted protein.
       0.468
sce0555
Hypothetical protein-signal peptide and transmembrane prediction.
       0.468
sce7969
Hypothetical protein; Family membership.
  
 
 0.463
sce3796
FKBP-type peptidyl-prolyl cis-trans isomerase; High confidence in function and specificity.
   
 
 0.413
fkpA
Peptidylprolyl isomerase.
   
 
 0.413
sce7544
Hypothetical protein; FKBP-type peptidyl-prolyl cis-trans isomerases 1.
   
 
 0.413
minE
Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
  
  
 0.402
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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