Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crtZBeta-carotene hydroxylase; Family membership. (163 aa)    
Predicted Functional Partners:
sce0582
Hypothetical protein.
 
  
 0.940
crtD
Putative methoxyneurosporene dehydrogenase; Family membership.
 
   
 0.879
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
       0.773
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
  
  
 0.759
crtB
Phytoene synthase; Family membership.
 
 
 0.680
sce2779
mutT/nudix family protein.
 
  
 0.652
sce1852
Hypothetical protein predicted by Glimmer/Critica.
  
     0.572
sce3710
Sensory box/GGDEF family protein.
   
    0.510
sce0430
Unnamed protein product.
  
 
 0.491
sce4533
Hypothetical protein predicted by Glimmer/Critica.
 
   
 0.446
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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