STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtDPutative methoxyneurosporene dehydrogenase; Family membership. (517 aa)    
Predicted Functional Partners:
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
 
 
 0.996
crtB
Phytoene synthase; Family membership.
  
 0.922
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
 
  
 0.914
crtZ
Beta-carotene hydroxylase; Family membership.
 
   
 0.837
sce4533
Hypothetical protein predicted by Glimmer/Critica.
  
     0.737
sce0430
Unnamed protein product.
  
  
 0.582
sce0358
Hypothetical protein; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.475
sce7885
Putative dehydrogenase.
  
     0.450
sce4024
Putative cobalamin binding protein.
 
  
 0.430
sce1808
Hypothetical protein; SAM-dependent methyltransferases.
  
    0.425
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.