Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
crtEFarnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family. (303 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Family membership.
 
 0.987
uppS1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.953
uppS2
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.952
sce4204
Geranyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
  
 
 0.939
sce4206
Diphosphomevalonate decarboxylase; Family membership.
  
 0.936
crtD
Putative methoxyneurosporene dehydrogenase; Family membership.
 
  
 0.935
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
 
  
 0.934
idi
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.926
ispB
Trans-octaprenyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
  
 
0.926
crtI1
Phytoene dehydrogenase; High confidence in function and specificity.
 
  
 0.814
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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