Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0588Probable MaoC family protein. (362 aa)    
Predicted Functional Partners:
sce0587
Probable acyl-CoA dehydrogenase.
 
 0.982
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.815
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.627
sce7555
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; Family membership.
  
 0.627
birA
Biotin-(acetyl-CoA-carboxylase) ligase; Family membership.
  
  
 0.566
sce0049
Thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.547
sce0373
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.547
pcaF
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.547
sce7554
Thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.547
sce7652
Acetyl-CoA acyltransferase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.547
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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