STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0588Probable MaoC family protein. (362 aa)    
Predicted Functional Partners:
sce0587
Probable acyl-CoA dehydrogenase.
 
 0.981
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.831
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.596
sce7555
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; Family membership.
  
 0.596
sce8012
AMP-binding enzyme family protein; Family membership.
  
  
 0.564
aceB
Malate synthase; High confidence in function and specificity; Belongs to the malate synthase family.
   
  
 0.558
birA
Biotin-(acetyl-CoA-carboxylase) ligase; Family membership.
  
  
 0.557
sce0049
Thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.555
sce0373
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.555
pcaF
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.555
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.