STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0605Hypothetical protein; FOG: TPR repeat. (1450 aa)    
Predicted Functional Partners:
sce3913
Protein kinase; Family membership.
 
 
 0.863
sce0609
Hypothetical protein; FOG: TPR repeat.
 
 
 0.841
sce0856
Tetratricopeptide repeat protein.
 
 
 0.827
sce1616
TPR domain protein.
 
 
 0.820
sce2515
Hypothetical protein predicted by Glimmer/Critica.
 
   0.789
sce6592
Hypothetical protein predicted by Glimmer/Critica.
 
 
 
 0.788
sce3861
Transcriptional regulator, MerR family; Family membership.
 
 
 0.782
sce2919
Tetratricopeptide repeat family protein.
 
   
 0.780
sce2812
Hypothetical protein; FOG: TPR repeat.
 
 
 
 0.771
sce0252
Hypothetical protein predicted by Glimmer/Critica; Family membership.
 
 
 
 0.767
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.