STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0609Hypothetical protein; FOG: TPR repeat. (2000 aa)    
Predicted Functional Partners:
sce0605
Hypothetical protein; FOG: TPR repeat.
 
 
 0.841
sce6521
Posible heat shock protein.
  
  0.810
sce8438
Hypothetical protein; DnaJ-class molecular chaperone with C-terminal Zn finger domain.
  
 
  0.809
sce0856
Tetratricopeptide repeat protein.
  
 
  0.798
sce0608
Hypothetical protein; FOG: TPR repeat.
      
0.797
sce8150
Two-component response regulator; Family membership.
  
 
 
 0.786
trmA
RNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
    0.783
sce2515
Hypothetical protein predicted by Glimmer/Critica.
  
   0.781
sce8705
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.781
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.780
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.