Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crtI2Putative Phytoene dehydrogenase; Family membership. (545 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase; Family membership.
 
  
 0.844
sce3718
Phytoene dehydrogenase; High confidence in function and specificity.
  
     0.635
crtC
Hydroxyneurosporene dehydrogenase; Family membership.
 
  
 0.597
crtE
Farnesyltranstransferase; Family membership; Belongs to the FPP/GGPP synthase family.
 
  
 0.508
sce0430
Unnamed protein product.
  
  
 0.507
sce6990
Hypothetical protein.
 
     0.498
sce5923
Carrier domain-containing protein; Unnamed protein product; Family membership.
 
     0.497
sce0612
Hypothetical protein predicted by Glimmer/Critica.
       0.496
sce3352
Hypothetical protein predicted by Glimmer/Critica.
 
     0.468
sce1167
Putative Methyltransferase; Family membership.
 
     0.457
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.