Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0622Unnamed protein product; Family membership. (202 aa)    
Predicted Functional Partners:
sce7217
Unnamed protein product; Family membership.
 
 
 
 0.834
sce8150
Two-component response regulator; Family membership.
 
 
 0.826
sce1593
Response regulator. CheY homologue.
  
 
 
 0.795
sce1653
Unnamed protein product; Family membership.
 
 
 
 0.780
sce0012
Response regulator; Family membership.
  
   
 0.772
sce2656
Two-component response regulator.
  
   
 0.770
sce4841
Two-component response regulator; Family membership.
  
   
 0.769
sce6354
Two-component system histidine kinase; Family membership.
  
 
 
 0.769
sce3649
Response regulatory domain-containing protein; Unnamed protein product; Family membership.
  
   
 0.768
sce3265
Sensor histidine kinase; Family membership.
  
 
   0.766
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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