STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0660Putative ABC transporter sodium permease; Family membership. (731 aa)    
Predicted Functional Partners:
natA
Sodium ABC transporter ATP-binding protein.
 
 
 0.987
sce2512
Hypothetical protein.
  
  
 0.856
sce5572
Putative integral membrane transport protein.
  
  
 0.676
sce6022
Conserved domain protein.
  
  
 0.623
sce0227
Conserved domain protein.
  
  
 0.575
sce0540
Hypothetical protein.
  
  
 0.575
sce0791
Hypothetical protein.
  
  
 0.575
sce5176
Conserved hypothetical protein DUF181.
  
  
 0.575
sce7124
Hypothetical protein.
  
  
 0.575
sce7140
Conserved domain protein.
  
  
 0.575
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.