Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0662Transcriptional regulator, LacI family; Family membership. (339 aa)    
Predicted Functional Partners:
fruB
Fructose-specific MTP; High confidence in function and specificity; Belongs to the PEP-utilizing enzyme family.
   
 
 0.800
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
    
 
 0.794
bglA4
Beta-glucosidase; High confidence in function and specificity.
 
     0.567
sce0661
Mannan endo-1,4-beta-mannosidase; Family membership; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.552
ptsH
Phosphocarrier protein HPr; High confidence in function and specificity.
 
 
 
 0.467
sce6823
NRPS/PKS hybrid.
    
 
 0.435
serB
SerB protein; High confidence in function and specificity.
     
 0.432
yhjM
Cellulase; Family membership.
  
     0.411
sce4958
Hypothetical protein.
  
     0.411
sce6940
Put. Sugar kinase; Specificity unclear.
 
  
 0.408
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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