STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxBSarcosine oxidase, beta subunit; Family membership. (382 aa)    
Predicted Functional Partners:
gcvT1
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
 
 
 0.947
sce2455
Putative NADH dehydrogenase; Family membership.
 
 
 0.805
sce8619
Putative oxidase; Function unclear.
 
   
 0.783
cysQ
Inositol monophosphatase family protein CysQ; High confidence in function and specificity.
       0.782
sce0671
Function unclear.
       0.781
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.532
sce3353
Putative aminomethyltransferase; Family membership; Belongs to the GcvT family.
  
 
 0.491
sce0668
Putative Oxidoreductase; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.490
thiG
Thiamine biosynthesis protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.475
sce3603
PE_PGRS family protein.
  
     0.449
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.