STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0689Hypothetical protein; Fe-S oxidoreductase. (497 aa)    
Predicted Functional Partners:
sce0734
Hypothetical protein; Fe-S oxidoreductase.
  
     0.761
sce0690
Fatty acid desaturase; High confidence in function and specificity.
       0.718
sce0691
Hypothetical protein predicted by Glimmer/Critica.
       0.718
sce7033
Hypothetical protein.
  
     0.704
sce3540
Uncharacterized protein conserved in cyanobacteria.
  
     0.700
sce2332
Hypothetical protein.
  
     0.688
sce8531
Hypothetical protein.
  
     0.668
sce3086
Uncharacterized protein conserved in cyanobacteria.
  
     0.665
sce2350
Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains.
  
     0.653
sce6146
Hypothetical protein; Predicted ATPase.
  
     0.646
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.