STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0763Putative exported peptidase / protease. (453 aa)    
Predicted Functional Partners:
ndk
Putative Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.710
sce7717
Hypothetical protein predicted by Glimmer/Critica.
    
 0.545
sce2306
Hypothetical protein predicted by Glimmer/Critica.
    
  0.538
sce7740
Hypothetical protein predicted by Glimmer/Critica.
    
  0.538
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
    
   0.512
sce2686
Hypothetical WD-repeat protein; Family membership.
    
  0.506
sce1145
Hypothetical protein predicted by Glimmer/Critica.
    
 0.492
sce1760
Hypothetical protein predicted by Glimmer/Critica.
    
 0.492
sce8398
Hypothetical protein; No COG number.
    
 0.492
pp2c12
Phosphoprotein phosphatase; High confidence in function and specificity.
    
   0.468
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (24%) [HD]