STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuBPutative outer membrane receptor for transport of vitamin B12. (779 aa)    
Predicted Functional Partners:
sce1347
Putative outer membrane protein.
  
  
 0.711
sce2511
Hypothetical protein.
  
 
 0.648
sce3259
Periplasmic protein TonB links inner and outer membranes.
  
 
 0.648
sce2290
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.552
mxcH
Probable TonB-dependent receptor; Family membership.
  
 
 0.501
sce6823
NRPS/PKS hybrid.
  
  
 0.501
cheW1
Putative chemotaxis signal transduction protein.
       0.463
aglR1
Adventurous gliding motility protein R; Family membership.
 
  
 0.461
aglR2
Adventurous gliding motility protein R.
 
  
 0.459
sce5808
TonB-dependent receptor; Family membership.
  
  
 0.454
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.