STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0787Hypothetical protein. (576 aa)    
Predicted Functional Partners:
sce1255
Cytochrome C; Family membership.
   
 
 0.685
sce0788
Unnamed protein product; Family membership.
       0.618
galE4
GalE4 protein; High confidence in function and specificity.
  
     0.496
sce4284
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.481
sce5953
Probable anion transporter ATPase; Function unclear.
  
     0.479
sce0789
Hypothetical protein predicted by Glimmer/Critica.
     
 0.461
sce1145
Hypothetical protein predicted by Glimmer/Critica.
    
 0.434
sce1760
Hypothetical protein predicted by Glimmer/Critica.
    
 0.434
sce8398
Hypothetical protein; No COG number.
    
 0.434
sce6239
Uncharacterized protein; Specificity unclear.
  
    0.429
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.