STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0799Putative alkaline phosphatase. (736 aa)    
Predicted Functional Partners:
phoD
Putative alkaline phosphatase.
  
  
 
0.928
folE
Putative GTP cyclohydrolase I; Belongs to the GTP cyclohydrolase I family.
    
 0.915
folB
FolB protein; Family membership.
     
 0.910
sce5883
PhoD_N domain-containing protein; Unnamed protein product; Specificity unclear.
  
  
 
0.905
ygcM1
6-pyruvoyltetrahydropterin synthase; Family membership.
     
  0.900
ygcM3
Putative 6-pyruvoyltetrahydropterin synthase; Family membership.
     
  0.900
sce0936
Hypothetical protein; Predicted phosphatase.
 
  
 0.514
sce8277
Probable Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
  0.500
sce0688
Endonuclease/exonuclease/phosphatase family.
 
  
 0.470
sce7203
Metalloprotease MEP1 homolog; Family membership.
  
     0.438
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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