Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sce0818Putative dioxygenase; Family membership. (549 aa)    
Predicted Functional Partners:
sce0820
Polyketide synthase; Family membership; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.980
sce0819
Polyketide synthase; Family membership.
 
 0.972
sce3195
Malonyl CoA-acyl carrier protein transacylase; Family membership.
  
 0.917
sce3192
Polyketide synthase; Family membership.
 
 
 0.867
sce3190
Polyketide synthase; Family membership.
 
 0.846
fabD3
Malonyl CoA-acyl carrier protein transacylase; Family membership.
 
  
 0.817
sce4888
Probable glycolipid synthase; Family membership.
 
  
 0.807
chiE
Polyketide synthase; High confidence in function and specificity.
 
  
 0.740
sce3188
Polyketide synthase; High confidence in function and specificity.
 
  
 0.739
sce3191
Polyketide synthase; Family membership.
 
  
 0.737
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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