Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce0856Tetratricopeptide repeat protein. (1400 aa)    
Predicted Functional Partners:
sce3131
Hypothetical protein predicted by Glimmer/Critica.
  
 
   0.924
grpE
Chloroplast GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...]
 
 
 0.869
sce0855
Protein kinase; Family membership.
 
     0.864
sce0605
Hypothetical protein; FOG: TPR repeat.
 
 
 0.827
sce0977
Hypothetical protein; FOG: TPR repeat.
  
 
  0.804
sce2387
Non-ribosomal peptide synthetase; Family membership.
   
 
 0.800
sce0609
Hypothetical protein; FOG: TPR repeat.
  
 
  0.798
sce8500
Hypothetical protein predicted by Glimmer/Critica.
 
 0.794
sce7985
Hypothetical protein.
 
 
 
 0.780
sce9355
Cellulose synthase 1 operon protein C precursor.
  
 
  0.778
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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