Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
sce0895Putative exported sugar-binding protein with thrombospondin-like C-terminal domain. (417 aa)    
Predicted Functional Partners:
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.654
sce6017
Hypothetical protein.
  
     0.585
sce1771
Keratin associated protein 5-4; Function unclear.
  
     0.546
sce6350
Vitelline membrane outer layer protein I-like Hypothetical protein.
  
     0.501
sce6730
Putative exported protease precursor.
  
     0.483
amiB
N-acetylmuramoyl-L-alanine amidase precursor; High confidence in function and specificity.
       0.465
sce5600
TROVE domain hypothetical protein.
  
     0.442
sce1566
Hypothetical protein predicted by Glimmer/Critica.
  
    0.433
sce2323
Hypothetical protein; Glucose/sorbosone dehydrogenases.
  
     0.426
sce9236
Putative secreted protein.
  
     0.416
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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