STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiBN-acetylmuramoyl-L-alanine amidase precursor; High confidence in function and specificity. (307 aa)    
Predicted Functional Partners:
amiC
AmiC protein; N-acetylmuramoyl-L-alanine amidase.
  
  
  0.928
sce7974
Putative exported peptidase; Family membership.
   
 
 0.755
sce2142
ABC transporter, periplasmic-substrate binding protein, putative; Family membership.
  
   
 0.656
sce2138
Putative multicopper oxidase.
  
   
 0.590
sce4392
Rhomboid family membrane protein.
 
 
   0.560
sce2139
Hypothetical protein.
  
     0.526
sce1279
Hypothetical protein.
  
     0.515
sce7121
Hypothetical protein; Predicted ATPase.
 
     0.498
sce4748
Hypothetical protein; Predicted Fe-S-cluster oxidoreductase.
  
     0.496
sce6992
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
   0.482
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.