STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0907Transcriptional regulator, AraC family; Family membership. (280 aa)    
Predicted Functional Partners:
sce6647
Probable transcriptional regulator.
  
     0.740
sce5415
Transcriptional regulator, AraC family; Family membership.
  
     0.723
sce1222
Putative araC-like transcription regulator.
  
     0.710
sce0906
methylated-DNA--protein-cysteine methyltransferase; Family membership.
     
 0.642
sce1410
Putative araC-like transcription regulator; Family membership.
  
     0.639
sce0709
Transcriptional regulator, AraC family; Family membership.
  
     0.591
sce1536
Transcriptional regulator, AraC family; Family membership.
  
     0.569
sce0161
Transcriptional regulator, AraC family; Family membership.
  
     0.559
sce0908
Hypothetical protein.
       0.504
sce4384
Hypothetical protein.
  
     0.446
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.