STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0918Hypothetical protein predicted by Glimmer/Critica. (336 aa)    
Predicted Functional Partners:
sce0919
CN hydrolase domain-containing protein; Unnamed protein product; Hypothetical protein.
       0.773
sce4190
Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.625
sce4309
Hybrid sensory histidine kinase; Family membership.
  
  
 0.501
sce1730
Hypothetical protein; Family membership.
  
  
 0.492
sce0629
RNA polymerase sigma factor; Family membership.
  
  
 0.489
sce1644
RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family.
  
  
 0.489
sce5014
RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family.
  
  
 0.489
sce6190
RNA polymerase sigma factor; Family membership; Belongs to the sigma-70 factor family.
  
  
 0.489
cheD
Putative chemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
  
  
 0.420
cheA1
Chemotaxis protein cheA; High confidence in function and specificity.
  
  
 0.402
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.