STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0927TonB-dependent receptor, putative; High confidence in function and specificity. (733 aa)    
Predicted Functional Partners:
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.851
tonB1
Putative TonB protein; Specificity unclear.
  
 
 0.829
sce4759
Hypothetical protein predicted by Glimmer/Critica.
  
     0.559
mxcH
Probable TonB-dependent receptor; Family membership.
 
 
 0.546
sce7540
Hypothetical protein predicted by Glimmer/Critica.
    
 
 0.543
sce7062
TonB-dependent receptor; Specificity unclear.
 
 
0.518
sce6823
NRPS/PKS hybrid.
  
  
 0.485
sce2702
Unnamed protein product; Hypothetical protein.
  
     0.450
sce8263
tonB family protein; Family membership.
 
 
 0.440
sce2511
Hypothetical protein.
  
 
 0.423
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.