STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase alpha chain; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (129 aa)    
Predicted Functional Partners:
panC
Putative Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 0.999
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.970
coaX
Putative transcriptional activator of the Baf family; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
 
  
 0.922
gabT1
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.911
gabT2
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.911
sce9190
Putative 4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.911
sce9194
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.911
sce6400
CN hydrolase domain-containing protein; Unnamed protein product; Specificity unclear.
    
  0.910
sce5007
Putative Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family.
    
 0.904
sce9189
Aldehyde dehydrogenase (NAD(+)); Family membership; Belongs to the aldehyde dehydrogenase family.
    
 0.904
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.