STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0980Putative transcriptional regulator. (319 aa)    
Predicted Functional Partners:
sce6114
Hypothetical protein predicted by Glimmer/Critica.
  
    0.781
sce0981
Putative oxidoreductase.
 
     0.772
sce0738
Cupin-like protein.
 
    0.766
yjgF
YjgF protein; Family membership.
  
     0.644
sce6113
Hypothetical conserved protein; Predicted membrane protein.
  
     0.642
sce6845
Transcriptional regulator, AraC family; Family membership.
  
  
 0.631
sce5189
Cupin domain hypothetical protein.
 
    0.582
sce5430
Hypothetical protein predicted by Glimmer/Critica.
  
     0.581
sce4958
Hypothetical protein.
  
     0.563
sce1385
Transcriptional regulator, TetR family; Family membership.
  
  
 0.534
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.