Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce0993Hypothetical protein-transmembrane prediction. (572 aa)    
Predicted Functional Partners:
sce0994
Hypothetical protein; Family membership.
 
     0.946
sce0129
Hypothetical protein.
  
     0.775
sce0554
Putative secreted protein.
  
     0.775
sce0736
Hypothetical protein-signal peptide prediction.
  
     0.775
sce0795
Unnamed protein product.
  
     0.775
sce1021
Conserved exported protein.
  
     0.775
sce1499
Putative secreted protein.
  
     0.775
sce2268
Hypothetical protein.
  
     0.775
sce2931
Hypothetical protein.
  
     0.775
sce3315
Hypothetical conserved secreted protein.
  
     0.775
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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