STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce0997Putative SAM-dependent methyltransferse. (337 aa)    
Predicted Functional Partners:
sce7963
UbiE/COQ5 methyltransferase; Family membership.
  
     0.717
sce6429
Putative SAM-dependent methyltransferase.
  
     0.688
ubiE4
Ubiquinone/menaquinone biosynthesis methyltransferase; Family membership.
  
     0.636
sce2700
Putative SAM-dependent methyltransferase; Family membership.
  
     0.596
tam1
Trans-aconitate 2-methyltransferase; Family membership.
  
     0.596
ubiE3
SAM-dependent methyltransferase.
  
     0.572
sce5286
Putative methyltransferase.
  
 
   0.570
sce1462
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.509
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
  
     0.483
sce1968
Methyltransferase; Family membership.
  
     0.469
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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