STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1004Putative membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (373 aa)    
Predicted Functional Partners:
sce1006
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 
 0.959
sce1005
Macrolide-specific ABC-type efflux carrier; Family membership.
 
 
 0.958
sce1003
ABC transporter, ATP-binding protein; Family membership.
 
 
 0.946
macB
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.832
sce7228
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.830
salY
Hypothetical protein; ABC-type antimicrobial peptide transport system permease component.
 
 0.829
sce2988
Outer membrane efflux protein; Specificity unclear.
 
 0.795
macB-2
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.794
mdtA1
RND family efflux transporter; Specificity unclear; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
0.704
sce4823
ABC transporter, ATP-binding protein.
 
 
 0.699
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.