STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1007Photoactive yellow protein (PYP); Family membership. (131 aa)    
Predicted Functional Partners:
sce4190
Uncharacterized protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.853
sce0777
CheA-like hybrid histidine kinase; Family membership.
  
 
 0.797
sce1730
Hypothetical protein; Family membership.
  
 
 0.560
sce3507
Two-component hybrid sensor and regulator; Family membership.
  
 
 0.426
sce6826
Two-component hybrid sensor and regulator; Family membership.
  
 
 0.426
cheW1
Putative chemotaxis signal transduction protein.
  
 
 0.422
cheW2
Purine-binding chemotaxis protein CheW.
  
 
 0.422
cheW3
Purine-binding chemotaxis protein CheW; Family membership.
  
 
 0.422
cheW4
CheW4 protein; Family membership.
  
 
 0.422
cheW5
Chemotaxis protein.
  
 
 0.422
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.