Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1028Glycosyltransferase; High confidence in function and specificity. (529 aa)    
Predicted Functional Partners:
lip
Triacylglycerol lipase.
     
  0.900
lipX
Similar to lactonizing lipase precursor.
     
  0.900
sce1030
Glycosyltransferase; Family membership.
 
     0.892
sce1029
Exporter of the RND superfamily; Family membership.
 
     0.855
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 
 0.696
sce7420
Uncharacterized protein conserved in bacteria.
  
     0.609
sce3514
Putative secreted protein.
  
     0.600
sce5605
Hypothetical protein.
 
     0.597
sce1301
Glycosyltransferase; Specificity unclear.
  
     0.583
sce1031
Hypothetical protein predicted by Glimmer/Critica.
       0.556
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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