Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1036Glycosyltransferase; Specificity unclear. (409 aa)    
Predicted Functional Partners:
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.770
sce3584
Glycosyltransferase; Function unclear.
  
 0.705
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 
 0.696
sce7322
Uncharacterized protein conserved in bacteria.
 
     0.676
sce0882
Glycosyltransferase; Specificity unclear.
  
 0.650
sce1038
Glycosyltransferase; Family membership.
 
     0.649
sce0875
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.578
wzc2
Protein tyrosine kinase.
 
  
 0.537
sce1037
NDP-sugar oxidoreductase; Specificity unclear.
  
    0.513
wza1
Outer membrane polysaccharide exporter; Specificity unclear.
 
  
 0.451
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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