Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1037NDP-sugar oxidoreductase; Specificity unclear. (331 aa)    
Predicted Functional Partners:
sce1038
Glycosyltransferase; Family membership.
 
    0.895
sce2249
Epimerase domain-containing protein; Unnamed protein product; Family membership.
  
     0.763
sce4241
Glycosyltransferase; Function unclear.
  
    0.651
mpg
Putative sugar-phosphate nucleotide transferase; High confidence in function and specificity.
 
 
 0.607
sce1300
Glycosyltransferase; Specificity unclear.
  
    0.569
glgA3
Glycogen synthase; High confidence in function and specificity.
  
    0.552
sce7327
Glycosyltransferase; Family membership.
  
    0.549
sce8918
Glycosyltransferase; Specificity unclear.
  
    0.538
glgA1
Glycogen synthase; High confidence in function and specificity.
  
    0.518
sce1036
Glycosyltransferase; Specificity unclear.
  
    0.513
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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