Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfcXIsomerases acting on hydroxy acids and derivatives; Family membership. (486 aa)    
Predicted Functional Partners:
boxC
Enoyl-CoA hydratase/isomerase; Family membership.
 
 
 0.996
aroK
Possible shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.833
sce1995
acyl-CoA synthetase; Family membership.
  
   
 0.734
paaZ
Aldehyde dehydrogenase.
  
  
 0.691
fcbC
4-hydroxybenzoyl-CoA thioesterase; Family membership.
 
   
 0.654
sce8661
Probable oxidoreductase; Family membership.
  
   
 0.604
sce4896
Hypothetical protein; Belongs to the UPF0311 family.
  
   
 0.556
sce2024
Hydroxysteroid (17-beta) dehydrogenase 4.
 
  
 0.542
sce4807
Probable FAD-dependent monooxygenase; Function unclear.
  
   
 0.533
sce7525
Putative hydroxylase.
  
   
 0.520
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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