Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
napGPutative ferredoxin; Family membership. (638 aa)    
Predicted Functional Partners:
nuoG
NADH dehydrogenase (ubiquinone); Family membership.
 
 0.971
sce1936
Putative NADH dehydrogenase; Family membership.
  
 
 0.967
phaA
pH adaptation potassium efflux protein PhaA; High confidence in function and specificity.
  
 
 0.967
hycG
NAD-dependent dehydrogenase subunit.
  
 
 0.958
sce7592
Putative Cytochrome-c oxidase; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.957
sce1085
Hypothetical protein.
 
   
 0.956
nuoF
NADH dehydrogenase (ubiquinone); High confidence in function and specificity.
  
 0.950
nuoE
NADH dehydrogenase (ubiquinone); High confidence in function and specificity.
  
 0.947
sce2646
Oxidoreductase; Specificity unclear.
  
 
 0.944
napB
Diheme cytochrome C precursor; Family membership.
  
  
 0.927
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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