Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ygfPPutative guanine deaminase; Family membership. (425 aa)    
Predicted Functional Partners:
deoD
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.915
hpt
Hypoxanthine-phosphoribosyltransferase; Family membership; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
 0.911
ppnP
Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
 0.901
sce0037
Conserved hypothetical protein YfiH; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.900
sce1094
Hypothetical protein predicted by Glimmer/Critica.
       0.773
yedX
Transthyretin-related protein; Family membership; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.770
sce5895
Putative Xanthine dehydrogenase; Family membership.
 
 
 0.766
ygeT
Putative Xanthine dehydrogenase.
 
  
  0.758
alc
Putative Allantoicase; Family membership; Belongs to the allantoicase family.
 
   
 0.645
sce5897
Hypothetical protein; Xanthine and CO dehydrogenases maturation factor XdhC/CoxF family.
 
    0.550
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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