Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1095Putative secreted protein. (363 aa)    
Predicted Functional Partners:
sce8169
Hypothetical protein.
  
     0.763
sce1096
Cell wall surface anchor family protein; High confidence in function and specificity.
   
   0.752
sce5586
Putative membrane protein.
  
     0.750
sce3992
Hypothetical protein.
  
     0.722
sce4262
Hypothetical protein.
 
     0.720
sce0977
Hypothetical protein; FOG: TPR repeat.
  
     0.716
sce4056
Hypothetical protein.
  
     0.715
sce5593
DUF323 domain conserved hypothetical protein.
  
     0.714
sce0825
Hypothetical protein.
  
     0.712
sce5590
Hypothetical protein.
  
     0.712
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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