STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1096Cell wall surface anchor family protein; High confidence in function and specificity. (748 aa)    
Predicted Functional Partners:
sce0951
Hypothetical protein; Predicted hydrolase of alkaline phosphatase superfamily.
  
     0.767
sce8140
Hypothetical protein predicted by Glimmer/Critica.
  
     0.760
sce1095
Putative secreted protein.
   
   0.752
atsA
Arylsulfatase (aryl-sulfate sulphohydrolase); High confidence in function and specificity.
 
     0.733
ygfP
Putative guanine deaminase; Family membership.
   
   0.518
sce1094
Hypothetical protein predicted by Glimmer/Critica.
       0.510
sce5586
Putative membrane protein.
  
 
   0.502
sce8780
Putative secreted protein.
  
 
   0.460
sce0473
Hypothetical protein predicted by Glimmer/Critica.
  
     0.459
sce7189
Putative exported alanine/arginine/valine-rich protein.
  
     0.457
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.