Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1098Hypothetical protein predicted by Glimmer/Critica. (675 aa)    
Predicted Functional Partners:
sce6216
Hypothetical protein.
 
     0.773
sce6983
Transposase; High confidence in function and specificity.
  
     0.771
sce0287
Hypothetical protein.
  
     0.769
sce6994
Hypothetical protein predicted by Glimmer/Critica.
 
     0.764
sce2311
Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
  
     0.762
sce2567
Hypothetical protein.
  
     0.740
sce7826
Conserved carbohydrate-binding protein, Rhs family; Family membership.
  
     0.736
sce6984
RhsA protein precursor.
  
     0.734
sce1895
Hypothetical protein.
  
     0.731
msrA2
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
 0.729
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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