STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1105Putative exported protein. (1149 aa)    
Predicted Functional Partners:
bamD
Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.920
yfgL
Hypothetical protein yfgL.
 
 
 0.905
surA
Peptidyl-prolyl cis-trans isomerase SurA.
 
 
 0.843
sce1107
Hypothetical protein.
 
   
 0.831
sce7989
Membrane-associated zinc metalloprotease,putative.
 
  
 0.801
sce6508
Putative membrane protein.
 
 
 0.780
sce7888
Membrane-associated protease; Function unclear.
  
  
 0.763
sce0395
Putative outer membrane protein.
  
     0.761
gspL
Putative general secretion pathway protein L; Family membership.
  
     0.761
sce0013
Hypothetical protein.
  
     0.759
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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