Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1106Hypothetical protein; ABC-type phosphate/phosphonate transport system periplasmic component. (267 aa)    
Predicted Functional Partners:
sce7418
Possible peptidase.
  
    0.609
sce2039
Glutamyl endopeptidase; Family membership; Belongs to the peptidase S1B family.
  
    0.559
sce7119
Probable serine protease; Family membership; Belongs to the peptidase S1B family.
  
    0.553
sce2038
Putative protease.
  
    0.546
sce7690
Hypothetical protein.
  
     0.511
sce1105
Putative exported protein.
       0.505
sce8733
Putative secreted protein.
  
    0.489
sce1515
Putative endopeptidase; Family membership; Belongs to the peptidase S1B family.
   
    0.488
sce1929
Putative protease I precursor; High confidence in function and specificity.
   
    0.488
sspA
Glutamyl endopeptidase; Family membership; Belongs to the peptidase S1B family.
   
    0.488
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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