Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1109Predicted integral membrane protein; Family membership. (544 aa)    
Predicted Functional Partners:
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.807
sce6794
Nucleotidyltransferase; Family membership.
  
  
 0.804
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
  
  
 0.796
galE5
GalE5 protein; High confidence in function and specificity.
  
  
 0.751
galE6
Probable UDP-glucose 4-epimerase; Family membership.
  
  
 0.751
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.619
gatC
Probable Glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
   
    0.495
sce8349
Glycosyltransferase; Family membership.
  
  
 0.484
wzc2
Protein tyrosine kinase.
  
  
 0.466
sce0882
Glycosyltransferase; Specificity unclear.
  
  
 0.443
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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