Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
omt | sce1113 | sce0292 | sce1113 | O-methyltransferase; Specificity unclear. | Hypothetical protein; Predicted O-methyltransferase. | 0.672 |
omt | sce2217 | sce0292 | sce2217 | O-methyltransferase; Specificity unclear. | Probable proteinase. | 0.630 |
sce1113 | omt | sce1113 | sce0292 | Hypothetical protein; Predicted O-methyltransferase. | O-methyltransferase; Specificity unclear. | 0.672 |
sce1113 | sce1114 | sce1113 | sce1114 | Hypothetical protein; Predicted O-methyltransferase. | Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. | 0.485 |
sce1113 | sce2217 | sce1113 | sce2217 | Hypothetical protein; Predicted O-methyltransferase. | Probable proteinase. | 0.630 |
sce1114 | sce1113 | sce1114 | sce1113 | Transcriptional regulator, LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. | Hypothetical protein; Predicted O-methyltransferase. | 0.485 |
sce2217 | omt | sce2217 | sce0292 | Probable proteinase. | O-methyltransferase; Specificity unclear. | 0.630 |
sce2217 | sce1113 | sce2217 | sce1113 | Probable proteinase. | Hypothetical protein; Predicted O-methyltransferase. | 0.630 |