Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce1177Hypothetical protein predicted by Glimmer/Critica. (204 aa)    
Predicted Functional Partners:
sce8455
Putative NAD(P)H dehydrogenase; Function unclear.
    
 0.928
sce1557
Hypothetical protein.
    
 0.902
sce7138
NAD(P)-bd_dom domain-containing protein; Unnamed protein product; Family membership.
    
 0.902
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
fba2
Fructose-bisphosphate aldolase; Family membership.
   
    0.804
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); High confidence in function and specificity.
   
    0.779
sce3268
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); Family membership.
   
    0.779
sce0299
LysM domain-containing protein; Unnamed protein product; Function unclear.
   
  
 0.768
dps
Probable DNA-binding stress protein, Dps family; High confidence in function and specificity; Belongs to the Dps family.
  
  
 0.757
sce7884
Hypothetical DNA-binding ferritin-like protein,Dps family; Family membership; Belongs to the Dps family.
  
  
 0.757
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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