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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
phoDPutative alkaline phosphatase. (541 aa)    
Predicted Functional Partners:
sce0799
Putative alkaline phosphatase.
  
  
 
0.928
sce5883
PhoD_N domain-containing protein; Unnamed protein product; Specificity unclear.
  
  
 
0.927
folE
Putative GTP cyclohydrolase I; Belongs to the GTP cyclohydrolase I family.
    
 0.915
folB
FolB protein; Family membership.
     
 0.910
ygcM1
6-pyruvoyltetrahydropterin synthase; Family membership.
     
  0.900
ygcM3
Putative 6-pyruvoyltetrahydropterin synthase; Family membership.
     
  0.900
cumA
Oxidoreductase; Family membership.
       0.543
sce0688
Endonuclease/exonuclease/phosphatase family.
 
  
 0.514
sce1535
Alcohol dehydrogenase; Family membership.
 
      0.495
sce1178
Two-component response regulator; Family membership.
       0.483
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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