STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce1187Hypothetical protein. (275 aa)    
Predicted Functional Partners:
sce3827
Low-density lipoprotein receptor-related protein.
  
     0.754
sce9236
Putative secreted protein.
  
     0.701
sce5460
Collagen alpha 2(I) chain precursor; Family membership.
 
 
   0.674
sce5935
Thrombospondin-like alanine-rich exported protein; Family membership.
  
 
   0.669
sce1332
Lysyl oxidase-like; Family membership.
  
     0.664
sce8646
Hypothetical protein predicted by Glimmer/Critica.
  
     0.658
sce2637
Peptidyl-glycine alpha-amidating monooxygenase precursor; High confidence in function and specificity.
  
 
   0.645
sce6017
Hypothetical protein.
  
     0.642
sce0136
Hypothetical protein.
  
 
   0.638
sce1771
Keratin associated protein 5-4; Function unclear.
  
     0.630
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.